イワフジツボ

英語論文（査読あり）

  1. H. Yokomizo, K. Fukaya, J. G. Lambrinos, Y. Kawai and T. Takada (2024) Interstage flow matrices: population statistic derived from matrix population models. Journal of Ecology.

  2. K. Takahata, H. Suetsugu, K. Fukaya and S. Shirota (2024) Bayesian state-space synthetic control method for deforestation baseline estimation for forest carbon credits. Environmental Data Science 3:e6. Open Access. [NeurIPS 2022 Workshop on Tackling Climate Change with Machine LearningでBest Paper (Pathway to Impact)に選ばれました]

  3. J. M. Kass, K. Fukaya, W. Thuiller and A. S. Mori (2024) Biodiversity modeling advances will improve predictions of nature’s contributions to people. Trends in Ecology and Evolution 39:338–348. Open Access.

  4. Y. Takeuchi, H. Borjigin, K. Niiyama, T. Sato, K. Fukaya, T. Okuda, M. Hayashi, H. Omar and A. M. Norizan (2023) UAV-based height measurement and height-diameter model integrating taxonomic effects: exploring vertical structure of aboveground biomass and species diversity in a Malaysian tropical forest. Environmental Research Ecology 2:035003. Open Access.

  5. S. Hoban, J. da Silva, A. Mastretta-Yanes, C. Grueber, M. Heuertz, M. Hunter, J. Mergeay, I. Paz-Vinas, K. Fukaya, F. Ishihama, R. Jordan, M. C. Latorre, A. J. MacDonald, V. Rincon-Parra, P. Sjögren-Gulve, N. Tani, H. Thurfjell and L. Laikre (2023) Monitoring status and trends in genetic diversity for the Convention on Biological Diversity: an ongoing assessment of genetic indicators in nine countries. Conservation Letters 16:e12953. Open Access.

  6. M. Kitano, K. Smallwood and K. Fukaya (2023) Bird carcass detection from integrated trials at multiple wind farms. Journal of Wildlife Management 87:e22326.

  7. K. Nakanishi, H. Yokomizo, K. Fukaya, T. Kadoya, S. S. Matsuzaki, J. Nishihiro, A. Kohzu and T. I. Hayashi (2022) Inferring causal impacts of extreme water-level drawdowns on lake water clarity using long-term monitoring data. Science of The Total Environment 838:156088. Open Access.

  8. K. Fukaya, N. I. Kondo, S. S. Matsuzaki and T. Kadoya (2022) Multispecies site occupancy modelling and study design for spatially replicated environmental DNA metabarcoding. Methods in Ecology and Evolution 13:183–193. Open Access. [Preprint] [研究紹介]

  9. Y. Iwasaki, K. Fukaya, S. Fuchida, S. Matsumoto, D. Araoka, C. Tokoro and T. Yasutaka (2021) Projecting future changes in element concentrations of approximately 100 untreated discharges from legacy mines in Japan by a hierarchical log-linear model. Science of The Total Environment 786:147500. Open Access. [研究紹介]

  10. K. Fukaya, H. Murakami, S. Yoon, K. Minami, Y. Osada, S. Yamamoto, R. Masuda, A. Kasai, K. Miyashita, T. Minamoto and M. Kondoh (2021) Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modeling. Molecular Ecology 30:3057–3067. [Preprint] [Postprint] [プレスリリース] [本研究の成果は大紀元時報, ナショナルジオグラフィック（スペイン語版）, アル・ジャジーラで取り上げられました] [特集号の表紙にマアジの写真（益田玲爾さん撮影）が使われました]

  11. K. Fukaya, B. Kusumoto, T. Shiono, J. Fujinuma and Y. Kubota (2020) Integrating multiple sources of ecological data to unveil macroscale species abundance. Nature Communications 11:1695. Open Access. [Preprint] [Video abstract] [プレスリリース] [本研究の成果は琉球新報, 日刊工業新聞で取り上げられました] [久保田さんによる紹介記事]

  12. S. S Matsuzaki, A. Kohzu, T. Kadoya, M. Watanabe, T. Osawa, K. Fukaya, K. Komatsu, N. Kondo, H. Yamaguchi, H. Ando, K. Shimotori, M. Nakagawa, T. Kizuka, A. Yoshioka, T. Sasai, N. Saigusa, B. Matsushita and N. Takamura (2019) Role of wetlands in mitigating the trade-off between crop production and water quality in agricultural landscapes. Ecosphere 10:e02918. Open Access. [研究紹介]

  13. H. Doi, K. Fukaya, S. Oka, K. Sato, M. Kondoh and M. Miya (2019) Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model. Scientific Reports 9:3581. Open Access.

  14. A. Kawamori, K. Fukaya, M. Kitazawa and M. Ishiguro (2019) A self-excited threshold autoregressive state-space model for menstrual cycles: forecasting menstruation and identifying within-cycle stages based on basal body temperature. Statistics in Medicine 38:2157–2170. [Preprint] [Postprint]

  15. Y. Kanamori, K. Fukaya and T. Noda (2017) Seasonal changes in community structure along a vertical gradient: patterns and processes in rocky intertidal sessile assemblages. Population Ecology 59:301–313.

  16. T. Noda, M. Sakaguchi, A. Iwasaki and K. Fukaya (2017) Influence of the 2011 Tohoku Earthquake on population dynamics of a rocky intertidal barnacle: cause and consequence of alteration in larval recruitment. Coastal Marine Science 40:35–43. Open Access.

  17. H. Yokomizo, T. Takada, K. Fukaya and J. G. Lambrinos (2017) The influence of time since introduction on the population growth of introduced species and the consequences for management. Population Ecology 59:89–97. Open Access.

  18. K. Fukaya, A. Kawamori, Y. Osada, M. Kitazawa and M. Ishiguro (2017) The forecasting of menstruation based on a state-space modeling of basal body temperature time series. Statistics in Medicine 36:3361–3379. Open Access. [Preprint]

  19. K. Fukaya, J. A. Royle, T. Okuda, M. Nakaoka and T. Noda (2017) A multistate dynamic site occupancy model for spatially aggregated sessile communities. Methods in Ecology and Evolution 8:757–767. Open Access. [Preprint]

  20. S. Yamamoto, K. Minami, K. Fukaya, K. Takahashi, H. Sawada, H. Murakami, S. Tsuji, H. Hashizume, S. Kubonaga, T. Horiuchi, M. Hongo, J. Nishida, Y. Okugawa, A. Fujiwara, M. Fukuda, S. Hidaka, K. W. Suzuki, M. Miya, H. Araki, H. Yamanaka, A. Maruyama, K. Miyashita, R. Masuda, T. Minamoto and M. Kondoh (2016) Environmental DNA as a ‘snapshot’ of fish distribution: a case study of Japanese jack mackerel in Maizuru Bay, Sea of Japan. PLoS ONE 11:e0149786. Open Access. [Correction] [プレスリリース] [本研究の成果は朝日新聞, 北海道新聞, 神戸新聞, 日本経済新聞, 水産経済新聞, みなと新聞で取り上げられました]

  21. T. Noda, A. Iwasaki and K. Fukaya (2016) Recovery of rocky intertidal zonation: two years after the 2011 Great East Japan Earthquake. Journal of the Marine Biological Association of the United Kingdom 96:1549–1555.

  22. R. Sahara, K. Fukaya, T. Okuda, M. Hori, T. Yamamoto, M. Nakaoka and T. Noda (2016) Larval dispersal dampens population fluctuation and shapes the interspecific spatial distribution patterns of rocky intertidal gastropods. Ecography 39:487–495. Open Access.

  23. K. Fukaya, T. Okuda, M. Nakaoka and T. Noda (2014) Effects of spatial structure of population size on the population dynamics of barnacles across their elevational range. Journal of Animal Ecology 83:1334–1343. Open Access.

  24. A. K. M. R. Alam, T. Hagino, K. Fukaya, T. Okuda, M. Nakaoka and T. Noda (2014) Early phase of the invasion of Balanus glandula along the coast of eastern Hokkaido: changes in abundance, distribution and recruitment. Biological Invasions 16:1699–1708. Open Access.

  25. K. Fukaya and J. A. Royle (2013) Markov models for community dynamics allowing for observation error. Ecology 94:2670–2677. Open Access.

  26. K. Fukaya, T. Okuda, M. Hori, T. Yamamoto, M. Nakaoka and T. Noda (2013) Variable processes that determine population growth and an invariant mean-variance relationship of intertidal barnacles. Ecosphere 4:48. Open Access.

  27. K. Fukaya, W. Shirotori, M. Kawai and T. Noda (2013) Patterns and processes of population dynamics with fluctuating habitat size: a case study of a marine copepod inhabiting tide pools. Oikos 122:235–246. [Postprint]

  28. H. Gotoh, K. Fukaya and T. Miura (2012) Heritability of male mandible length in the stag beetle, Cyclommatus metallifer. Entomological Science 15:430–433.

  29. K. Fukaya, T. Okuda, M. Nakaoka, M. Hori and T. Noda (2010) Seasonality in the strength and spatial scale of processes determining intertidal barnacle population growth. Journal of Animal Ecology 79:1270–1279. Open Access. [F1000 review]

日本語論文（査読あり）

  1. 久保田 康裕, 楠本 聞太郎, 塩野 貴之, 五十里 翔吾, 深谷 肇一, 高科 直, 吉川 友也, 重藤 優太郎, 新保 仁, 竹内 彰一, 三枝 祐輔, 小森 理 (2023) 生物多様性ビッグデータに基づいたネイチャーの可視化：その現状と展望. 計量生物学 43:145–188. Open Access.

  2. 深谷 肇一 (2022) 日本生態学会の会員構成から見るジェンダー不均衡. 日本生態学会誌 72:191–198. Open Access.

  3. 深谷 肇一 (2016) 動的サイト占有モデル—状態の不確実性を考慮したサイト占有動態の統計的推測. 統計数理 64:3–22. Open Access.

  4. 深谷 肇一 (2016) 状態空間モデルによる時系列解析とその生態学への応用. 日本生態学会誌 66:375–389. Open Access.

日本語論文（査読なし）

  1. 深谷 肇一 (2022) マクロ生物調査のための環境DNA分析―種の検出と定量およびその他の応用における可能性と課題―. 全国環境研会誌 47:159–165. Open Access.

  2. 深谷 肇一, 長田 穣, 源 利文 (2018) 環境DNAによる個体数・生物量推定の可能性. 海洋と生物 40:47–53.

  3. 北野 雅人, 深谷 肇一 (2016) 都市鳥類の生息モデルに基づいた緑地計画技術. 建設機械施工 68:89–94.

プレプリント

  1. Y. Goto, H. Weimerskirch, K. Fukaya, K. Yoda, M. Naruoka and K. Sato (2022) Albatrosses employ orientation and routing strategies similar to yacht racers. bioRxiv. DOI: 10.1101/2022.12.13.520348

  2. Y. Yao, K. Fukaya and T. Noda (2021) A new framework to understand context dependence of two-species population dynamics: a case study of rocky intertidal sessile assembly. Authorea. DOI: 10.22541/au.161700683.30663350/v1

書籍

  1. Bryan F. J. Manly and Jorge A. Navarro Alberto (Eds.) (2023) 生態学のための標本抽出法. 深谷 肇一 訳. 共立出版.

  2. M. Kéry and J. A. Royle (2021) 生態学のための階層モデリング—RとBUGSによる分布・個体数量・種の豊かさの統計解析—. 深谷 肇一, 飯島 勇人, 伊東 宏樹 監訳. 飯島 勇人, 伊東 宏樹, 奥田 武弘, 長田 穣, 川森 愛, 柴田 泰宙, 高木 俊, 辰巳 晋一, 仁科 一哉, 深澤 圭太, 深谷 肇一, 正木 隆 訳. 共立出版.

  3. A. Guisan, W. Thuiller, N. E. Zimmermann (2020) 野生生物の生息適地と分布モデリング—Rプログラムによる実践—. 久保田 康裕 監訳. 楠本 聞太郎, 久保田 康裕, 小森 理, 三枝 祐輔, 佐藤 恵里, 塩野 貴之, 鈴木 智之, 須藤 健二, 田中 崇行, 比嘉 基紀, 深谷 肇一, 藤沼 潤一 訳. 共立出版.

  4. 廣瀬 雅代, 稲垣 佑典, 深谷 肇一 (2018) サンプリングって何だろう—統計を使って全体を知る方法（岩波科学ライブラリー271）. 岩波書店.

  5. M. Kéry and M. Schaub (2016) BUGSで学ぶ階層モデリング入門—個体群のベイズ解析—. 飯島 勇人, 伊東 宏樹, 深谷 肇一, 正木 隆 訳. 共立出版.

  6. 岩波データサイエンス刊行委員会 (2016) 岩波データサイエンス Vol. 4 （特集：地理空間情報処理）. 岩波書店.

  7. J. Urabe and T. Nakashizuka (2016) Ecological Impacts of Tsunamis on Coastal Ecosystems: Lessons from the Great East Japan Earthquake. Springer.
    • T. Noda, A. Iwasaki and K. Fukaya (2016) Rocky intertidal zonation: impacts and recovery from the Great East Japan Earthquake. Chapter 3, pp. 25–34.
    • A. Iwasaki, K. Fukaya and T. Noda (2016) Quantitative evaluation of the impact of Great East Japan Earthquake and tsunami on the rocky intertidal community. Chapter 4, pp. 35–46.
    • T. Noda, M. Sakaguchi, A. Iwasaki and K. Fukaya (2016) Rocky intertidal barnacle population dynamics: impacts and recovery from the Great East Japan Earthquake. Chapter 5, pp. 47–58.
  8. T. Furuichi, J. Yamagiwa and F. Aureli (2015) Dispersing Primate Females — Life History and Social Strategies in Male-Philopatric Species. Springer.
    • I. Matsuda, K. Fukaya, C. Pasquaretta and C. Sueur (2015) Factors influencing grooming social networks: insights from comparisons of colobines with different dispersal patterns. Chapter 10, pp. 231–254.